Articles

Scholte LLS, Mourão MM, Pais FS, Melesina J, Robaa D, Volpini AC, Sippl W, Pierce RJ, Oliveira G, Nahum LA (2017) Evolutionary relationships among protein lysine deacetylases of parasites causing neglected diseases. Infect Genet Evol. 53:175-188. PMID: 28506839.

Cuesta-Astroz Y, Oliveira FS, Nahum LA, Oliveira G. (2017) Helminth secretomes reflect different lifestyles and parasitized hosts. Int J Parasitol. 47(9):529-544. PMID: 28336271.

Badotti F, de Oliveira FS, Garcia CF, Vaz AB, Fonseca PL, Nahum LA, Oliveira G, Góes-Neto A. (2017) DNA barcode markers for the identification of Basidiomycota (Fungi). BMC Microbiol. 17(1):42. PMID: 28228107.

Cuesta-Astroz Y, Scholte LL, Pais FS, Oliveira G, Nahum LA (2014) Evolutionary analysis of the cystatin family in three Schistosoma species. Front Genet. 5:206. PMID: 25071834.

Bonin CP, Baccarin RY, Nostell K, Nahum LA, Fossum C, de Camargo MM. (2013) Lipopolysaccharide-induced inhibition of transcription of tlr4 in vitro is reversed by dexamethasone and correlates with presence of conserved NFκB binding sites. Biochem Biophys Res Commun. 432(2):256-61. PMID: 23402753.

Nahum LA, Mourão MM, Oliveira G. (2012) New frontiers in schistosoma genomics and transcriptomics. J Parasitol Res. 849132. PMID: 23227308.

Silva LL, Marcet-Houben M, Nahum LA, Zerlotini A, Gabaldón T, Oliveira G. (2012) The Schistosoma mansoni phylome: using evolutionary genomics to gain insight into a parasite's biology. BMC Genomics. 13:617. PMID: 23148687.

Silva LL, Marcet-Houben M, Zerlotini A, Gabaldón T, Oliveira G, Nahum LA. (2011) Evolutionary histories of expanded peptidase families in Schistosoma mansoni. Mem Inst Oswaldo Cruz. 106(7):864-77. PMID: 22124560.

Avelar LG, Nahum LA, Andrade LF, Oliveira G (2011) Functional Diversity of the Schistosoma mansoni Tyrosine Kinases. J Signal Transduct. 603290. PMID: 21776387.

Andrade LF, Nahum LA, Avelar LGA, Silva LL, Zerlotini A, Ruiz JC, Oliveira O (2011) Eukaryotic protein kinases (ePKs) of the helminth parasite Schistosoma mansoni. BMC Genomics 12(1):215. PMID: 21548963.

Oliveira SB, Ibraim IC, Tadei WP, Ruiz JC, Nahum LA, Brito CFA, Moreira LA. (2011) Identification of a fibrinogen-related protein (FBN9) gene in neotropical anopheline mosquitoes. Malaria Journal. 10:21. PMID : 21288344.

Nahum LA, Goswami S, Serres MH. (2009) Protein families reflect the metabolic diversity of organisms and provide support for functional prediction. Physiol Genomics. 38(3):250-60. PMID: 19491149.

Nahum LA, Reynolds MT, Wang ZO, Faith JJ, Jonna R, Jiang ZJ, Meyer TJ, Pollock DD. (2006) EGenBio: a data management system for evolutionary genomics and biodiversity. BMC Bioinformatics. 7 Suppl 2:S7. PMID: 17118150.

Camargo MM, Nahum LA. (2005) Adapting to a changing world: RAG genomics and evolution. Hum Genomics. 2(2):132-7. PMID: 16004728.

Nahum LA, Pereira SL, Fernandes, F.M.C., Matioli, S.R. and Wajntal A (2003) Diversification of Ramphastinae (Aves, Ramphastidae) prior to the Cretaceous/Tertiary boundary as shown by molecular clock of mtDNA sequences. Genetics and Molecular Biology 26(4):411-418.

Serres MH, Gopal S, Nahum LA, Liang P, Gaasterland T, Riley M. (2001) A functional update of the Escherichia coli K-12 genome. Genome Biol. 2(9):RESEARCH0035. PMID: 11574054.

Nahum LA, Riley M. (2001) Divergence of function in sequence-related groups of Escherichia coli proteins. Genome Res. 11(8):1375-81. PMID: 11483578. 

Miyaki CY, Griffiths, R., Orr, K., Nahum LA, Pereira SL and Wajntal A (1998) Sex identification of parrots, toucans, and curassows by PCR: perspectives for wild and captive population studies. Zoo Biology 17:415-423. 

Book chapters

Nahum LA, Ruiz JC (2015) Filogenômica. In: Leandro Marcio Moreira. (Org.). Ciências genômicas: fundamentos e aplicações. 1ed. Ribeirão Preto: Sociedade Brasileira de Genética. p. 117-142.  

Nahum LA (2012) Genome Evolution. In: Molecular Biology and Evolution. S.R. Matioli & F.M.C. Fernandes editors. 2nd edition. Holos Editora, Ribeirão Preto, SP – Brazil. p. 91-104.  

Nahum LA and Pereira SL (2008) Phylogenomics, Protein Family Evolution, and the Tree of Life: An Integrated Approach between Molecular Evolution and Computational Intelligence. In: Smolinski TG, Milanova MG, Hassanien A-E (eds), Studies in Computational Intelligence (SCI) 122, 259–279. Springer-Verlag Berlin Heidelberg. 

Nahum LA (2001) Genome Evolution. In: Molecular Biology and Evolution. S.R. Matioli editor. 1st edition. Holos Editora, Ribeirão Preto, SP – Brazil. p. 82-96.